Ranked as #1

Payroll Software for S-Corporation

Simplify how you pay yourself and your employees with payroll software built for S-Corporations. Automate your reasonable salary calculations, shareholder distributions, tax withholdings, and compliance with IRS S-Corp payroll rules. Whether you’re a solo-owner S-Corp or managing a team, handle payroll efficiently while meeting all federal and state requirements.

Online Payroll Software
Features and Benefits

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Employee Self-Service (ESS)

Employees can view their pay details and benefits online, improving transparency and satisfaction.

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Enhanced Accuracy

Reduces errors in pay calculations and ensures compliance with tax regulations.

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Improved Security

Protects sensitive payroll data through secure systems and access controls.

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Time Savings

Automates routine payroll tasks, freeing up HR to focus on strategic initiatives.

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Reduced Paperwork

Significantly reduces paper use, boosting sustainability and reducing clutter.

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Cost-Effective

Minimizes HR needs and reduces the potential costs associated with payroll errors.

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Payroll Processing

WebHR’s payroll software integrates smoothly with time and attendance systems to automatically calculate salaries, shareholder payments, allowances, reimbursements, and bonuses, making it ideal for both solo-owner and multi-employee S-Corporations.

The system also manages all types of deductions, including tax withholdings, benefits, and retirement contributions, ensuring compliance with S-Corporation payroll requirements wherever your business operates. This helps S-Corp owners maintain accuracy, reduce administrative tasks, and keep every payment on schedule, from your own reasonable salary to wages for your team.

Direct Deposit and Payment Options

WebHR’s payroll software for S-Corporations offers fast and secure direct deposit, ensuring that both owners and employees receive payments promptly and safely in their bank accounts.

For businesses that prefer alternatives, the system allows easy printing of paychecks after payroll processing. WebHR also supports multiple payment methods, including bank transfers, digital wallets, and printed checks, giving S-Corp owners the flexibility to match diverse operational needs.

This comprehensive approach to payment reflects WebHR’s commitment to flexibility, security, and efficiency in S-Corporation payroll management, whether you operate as a solo owner or manage a growing team.

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Process Payroll Anywhere, Anytime!

Run payroll on the go with WebHR’s mobile app for Android & iOS. Simple, secure, and hassle-free payroll processing wherever you are.

WebHR App Available on GooglePlay StoreWebHR App Available on App Store
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Global Payroll Configuration

WebHR’s payroll software allows S-Corporations to configure multiple payroll setups, accommodating both company-specific policies and regional regulations. Whether you operate in one location or across multiple regions, you can easily adjust currencies, pay schedules, and settings to meet diverse global payroll requirements..

The system supports creating tailored payroll structures for different roles, from the S-Corp owner’s reasonable salary to full-time employees and part-time contractors, ensuring every payment is accurate, timely, and compliant.

WebHR’s advanced payroll module adapts to local labor and tax regulations worldwide, reducing the risk of compliance issues and ensuring smooth payroll operations for S-Corporations of any size.

Employee Information Management

WebHR’s HR and payroll software centralizes all payroll-related data for S-Corporations in one secure platform, from banking details to salary structures. The system tracks and manages detailed salary breakdowns for both salaried and hourly team members, making it ideal for solo-owner S-Corps as well as multi-employee operations with diverse staffing arrangements.

Historical payslips are securely stored, creating a reliable archive for future reference, financial planning, and annual audits. WebHR also provides instant access to employee and payroll information, streamlining HR processes and improving the efficiency of data retrieval. This level of accessibility helps S-Corp owners maintain accurate records, stay compliant with payroll requirements, and manage their workforce effectively.

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The Best Payroll Software for S-Corp

Elevate your S-Corporation’s operations with WebHR’s all-in-one payroll and HR platform, designed for both solo-owner and multi-employee S-Corps. Automate payroll calculations, manage shareholder salaries and employee wages, ensure compliance with regional labor and tax requirements, and gain real-time workforce insights, all from one easy-to-use system.

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Reports

Reporting and Analytics

WebHR’s HR and payroll software provides S-Corporations with detailed reports on compensation, shareholder distributions, tax summaries, and overall payroll expenses, delivering valuable insights into the financial health of the business. Built-in analytics highlight trends and patterns in payroll data, helping S-Corp owners and managers make strategic decisions and optimize workforce costs.

Dynamic dashboards offer a clear, real-time view of key payroll metrics on a single screen, enabling owners, finance teams, and HR staff to monitor and manage payroll with precision. By combining payroll processing with advanced reporting and analytics, WebHR gives S-Corporations complete visibility into payroll operations, empowering informed, data-driven decision-making for sustainable growth.

Tax Management and Compliance

WebHR’s payroll software automatically calculates tax withholdings based on the latest regulations in any location, ensuring accuracy and compliance for S-Corporations of all sizes. The system continuously updates tax rules and rates to reflect current laws, helping S-Corp owners avoid costly compliance issues and penalties.

All tax-related data is securely stored, making it quick and easy to retrieve for audits, annual reporting, or compliance checks. By simplifying tax management and reducing administrative workload, WebHR enables S-Corporations to focus on growing their business while maintaining full compliance with payroll and tax requirements.

Countries’ specific tax rules and regulations

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